SOS-система репарации ДНК у бактерий (обзор)

SOS-система репарации ДНК у бактерий (обзор)

Автор: Ушаков В.Ю.

Журнал: Вестник Пермского университета. Серия: Биология @vestnik-psu-bio

Рубрика: Микробиология

Статья в выпуске: 2, 2010 года.

Бесплатный доступ

Обобщены современные представления о функционировании SOS-системы репарации ДНК у бактерий. Особое внимание уделяется функциям и структуре основного регулятора SOS- ответа, белка RecA, как участника не только репарации, но и гомологичной рекомбинации ДНК.

Репарация днк, мутагенез

Короткий адрес: https://sciup.org/147204495

IDR: 147204495

Список литературы SOS-система репарации ДНК у бактерий (обзор)

  • Глазер В.М. Гомологичная генетическая рекомбинация//Сорос. образоват. журн. 1998. Т. 7. С. 13-21.
  • Октябрьский О.Н. и др. Роль тиоловых редокссистем в отклике бактерий Escherichia coli на пероксидный стресс//Микробиология. 2007. Т. 76, вып. 6. С. 759-765.
  • Октябрьский О.Н. и др. Роль тиоловых редокссистем в ответе бактерий Escherichia coli на облучение дальним УФ-светом//Микробиология. 2009. Т. 78, вып. 3. С. 328-333.
  • Патрушев Л.И. Экспрессия генов. М.: Наука, 2000. С. 449-452.
  • Сойфер В.Н. Репарация генетических повреждений//Сорос. образоват. журн. 1997. Т. 8. С. 4-13.
  • Banerjee S.K. et al. SOS-depended replication past a single trans-cyr T-T cyclobutane dimer gives a different mutation spectrum and increased error rate compared with replication past this lesion in uninduced cells//J. Bacteriol. 1990. Vol. 172. P. 2105-2112.
  • Benson F.E., Collier S., Lloyd R.G. Evidence of abortive recombination in ruv mutants of Escherichia coli//Mol. Gen. Genet. 1991. Vol. 225. P. 266-272.
  • Brawn K., Fridovich I. Increased superoxide radical production evokes inducible DNA repair in Escherichia coli//J. Biol. Chem. 1985. Vol. 260. P. 922-925.
  • Burchardt S.E. et al. UmuD mutagenesis protein of Escherichia coli: overproduction, purification and cleavage by RecA//Proc. Natl. Acad. Sci. USA. 1988. Vol. 85. P. 1811-1815.
  • Capaldo F.N., Rumsey G., Barbour S.D. Analysis of the growth of recombination-deficient strains of Escherichia coli K-12//J. Bacteriol. 1974. Vol. 118. P. 242-249.
  • Chase J.W. et al. Amplification of ssb-1 mutant single-stranded DNA binding protein in Escherichia coli//J. Mol. Biol. 1983. Vol. 164. P. 193-211.
  • Chen Z., Yang H., Pavletich N. Mechanism of homologous recombination from the RecAssDNA/dsDNA structures//Nature. 2008. Vol. 453. P. 489-494.
  • Cirz R.T. et al. Inhibition of mutation and combating the evolution of antibiotic resistance//PLoS Bi28 ology. 2005. Vol. 3. P. 1024-1033.
  • Dahan-Grobgeld E. et al. Reversible induction of ATP synthesis by DNA damage and repair in Escherichia coli. In vivo NMR studies//J. Biol. Chem. 1998. Vol. 273. P. 30232-30238.
  • D'Ari R. The SOS-system//Biochimie. 1985. Vol. 67. P. 343-347.
  • Egelman E.H. Implications of the RecA structure//Biol. Reports Ltd. 2009. Vol. 1 (7) P. 1-3.
  • Elledge S.J., Walker G.C. Protein required for ultraviolet light and chemical mutagenesis: identification of the products of the umuC locus of Escherichia coli//J. Mol. Biol. 1983. Vol. 164. P. 175-192.
  • Fernandez de Henestrosa A.R. et al. Identification of additional genes belonging to the LexA regulon in Escherichia coli//Mol. Microbiol. 2000. Vol. 37. P. 680-686.
  • Friedberg E.C., Walker G.C., Siede W. DNA repair and mutagenesis//ASM Press. Washington, DC, 1995.
  • Goerlich O., Quillaret P., Hofnung M. Induction of the SOS response by hydrogen peroxide in various Escherichia coli mutants with altered protection against oxidative DNA damage//J. Bacteriol. 1989. Vol. 171. P. 6141-6147.
  • Herman L., Luria S.E. Transduction studies on the role rec+ gene in the ultraviolet induction of prophage//J. Mol. Biol. 1967. Vol. 23. P. 117-133.
  • Horii T., Ogawa T., Ogawa H. Organization of recA gene of Escherichia coli//Proc. Natl. Acad. Sci. USA. 1980. Vol. 77. P. 313-317.
  • Houten B. Nucleotide excision repair in Escherichia coli//Microb. Mol. Biol. Rev. 1990. Vol. 54. P. 18-51.
  • Howard-Flanders P., Boyce R.P. DNA repair and genetic recombination: studies on mutants of Escherichia coli defective in these processes//Radiat. Res. 1966. Vol. 6. P. 156-181.
  • Huisman O., D'Ari R. An inducible DNA replicationcell division coupling mechanism in Escherichia coli//Nature (London). 1981. Vol. 290. P. 797-799.
  • Imlay J.A., Linn S. Mutagenesis and stress responses induced in Escherichia coli by hydrogen peroxide//J. Bacteriol. 1987. Vol. 169. P. 2967-2976.
  • Inouye M. Pleiotropic effect of the recA gene of Escherichia coli uncoupling of cell division from deoxyribonucleic acid replication//J. Bacteriol. 1971. Vol. 106. P. 539-542.
  • Ishioka K. et al. Abortive recombination in Escherichia coli ruv mutants block chromosome partitioning//Genes Cells. 1998. Vol. 3. P. 209-220.
  • Janion C. Inducible SOS response system of DNA repair and mutagenesis in Escherichia coli//Int. J. Biol. Sci. 2008. Vol. 4. P. 338-344.
  • Janion C. Some aspects of the SOS response system -a critical survey//Acta Biochimica Polonica. 2001. Vol. 48. P. 599-610.
  • Karu A.E., Belk E.D. Introduction of Escherichia coli recA protein via recBC and alternative pathways: quantitation by enzyme-linked immunosorbent assay (ELISA)//Mol. Gen. Genet. 1982. Vol. 185. P. 275-282.
  • Kowalczykowski S.C. Mechanistic aspects of the DNA strand exchange activity of E. coli RecA protein//Trends Biochem. Sci. 1987. Vol. 12. P. 141-145.
  • Kowalczykowski S.C. Initiation of genetic recombination and recombination-depended replication//Trends Biochem. Sci. 2000. Vol. 25. P. 156-165.
  • Kowalczykowski S.C. et al. Biochemistry of homologous recombination in Escherichia coli//Microbiol. Rev. 1994. Vol. 58. P. 401-465
  • Kuramitsu S. et al. Cysteinyl residues of Escherichia coli RecA protein//Biochem. 1984. Vol. 23. P. 2363-2367.
  • Kuzminov A. Recombinational repair of DNA damage in Escherichia coli and bacteriophage//Microb. Mol. Biol. Rev. 1999. Vol. 63. P. 751-813.
  • Lawrence C.W. et al. Mutation frequency and spectrum resulting from a single abasic site in a single-stranded vector//Nucleid Acid Res. 1990. Vol. 18. P. 2153-2157.
  • LeCleric J.E., Borden A., Lawrence C.W. The thymine-thymine pyrimidine-pyrimidone (6-4) ultraviolet light photoproduct is highly mutagenic and specifically induced 3' thymineto-cytosine transition in Escherichia coli//Proc. Natl. Acad. Sci. USA. 1991. Vol. 88. P. 9685-9689.
  • Lewis L.K. et al. Identification of high affinity binding sites for LexA which define new DNA damageinducible genes in Escherichia coli//J. Mol. Biol. 1994. Vol. 241. P. 507-523.
  • Lieberman H.B., Witkin E.M. DNA degradation, UV sensitivity and SOS-mediated mutagenesis in strains of Escherichia coli deficient in singlestrand DNA binding protein: effects of mutation and treatments that alter levels of exonuclease V or RecA protein//Mol. Gen. Genet. 1983. Vol. 190. P. 92-100.
  • Lin J.J., Sancar A. (A)BC exinuclease: the Escherichia coli nucleotide excision repair enzyme//J. Mol. Biol. 1992. Vol. 6. P. 2219-2224.
  • Lindsley J.E., Cox M.M. Dissociation pathway for RecA nucleoprotein filaments formed on linear duplex DNA//J. Mol. Biol. 1989. Vol. 205. P. 695-711.
  • Lloubes R., Baty D., Lazdunski C. The promoters of the genes for colicin production, release and immunity in the ColA plasmid: effects of convergent transcription and LexA protein//Nucleic Acid Res. 1986. Vol. 14. P. 2621-2636.
  • Lloyd R.G., Benson F.E., Shurvinton C.E. Effect of ruv mutations on recombination and DNA repair in Escherichia coli K-12//Mol. Gen. Genet. 1984. Vol. 193. P. 303-309.
  • Lwoff A. Lysogeny//Bacteriol. Rev. 1953. Vol. 17. P. 237-269.
  • Maiques E. et al. B-lactam antibiotics induce the SOS response and horizontal transfer of virulence facors in Staphylococcus aureus//J. Bacteriol. 2006. Vol. 188. P. 2726-2729.
  • Matic I., Rayssiguier C., Radman M. Interspecies gene exchange in bacteria: the role of SOS and mismatch repair system in evolution on species//Cell. 1995. Vol. 80. P. 507-515.
  • McEntree K. Genetic analysis of the Escherichia coli K-12 srl region//J. Bacteriol. 1977. Vol. 132. P. 904-911.
  • McKenzie G. et al. The SOS response regulates adaptive mutation//Proc. Natl. Acad. Sci. USA. 2006. Vol. 97. P. 6646-6651.
  • McPartland A., Green I., Echols H. Control of recA gene RNA in Escherichia coli: regulatory and signal genes//Cell. 1980. Vol. 20. P. 731-737.
  • Mellon I., Hanawalt P.C. Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand//Nature. 1989. Vol. 342. P. 95-98.
  • Meyer R.R., Laine P.S. The single-stranded DNAbinding protein of Escherichia coli//Microb. Mol. Biol. Rew. 1990. Vol. 54. P. 342-380.
  • Michel B. After 30 years of study, the bacterial SOS response still surprises us//PloS Biology. 2005. Vol. 3. P. 1174-1176.
  • Miller C. et al. SOS respnse induction by beta-lactams and bacterial defense against antibiotic lethality//Science. 2004. Vol. 305. P. 1629-1631.
  • Mizusawa S., Gottesman S. Protein degradation in Escherichia coli: the lon gene controls the stability of the SulA protein//Proc. Natl. Acad. Sci. USA. 1983. Vol. 80. P. 358-362.
  • Mukherjee A., Cao C., Lutkenhaus J. Inhibition of FtsZ polymerization by SulA, an inhibitor of septation in Escherichia coli//Proc. Natl. Acad. Sci. USA. 1998. Vol. 95. P. 2885-2890.
  • Mustard J.A., Little J.W. Analysis of Escherichia coli RecA interaction with LexA, CI, and UmuD by site-directed mutagenesis of recA//J. Bacteriol. 2000. Vol. 182. P. 1659-1670.
  • Opperman T. et al. A model for a umuDC depended prokaryotic DNA damage checkpoint//Proc. Natl. Acad. Sci. USA. 1999. Vol. 96. P. 9218-9223.
  • Prinz W.A. et al. The role of the thioredoxin and glutaredoxin pathways in reducing protein disulfide bonds in Escherichia coli cytoplasm//J. Biol. Chem. 1997. Vol. 272 P. 15661-15667.
  • Radman M. Phenomenology of a inducible mutagenic DNA repair pathway in Escherichia coli: SOS repair hypothesis//Molecular and enviromrntal aspects of mutagenesis. Springfield IL: Charles C Thomsa publisher, 1974. P. 128-142.
  • Rangarajan S., Woodgate R., Goodman M.F. A phenotype for enigmatic DNA polymerase II in replication restart in UV-irradiated Escherichia coli//Proc. Natl. Acad. Sci. USA. 1999. Vol. 96. P. 9224-9229.
  • Rehrauer W.M. et al. Interaction of Escherichia coli RecA protein with LexA repressor. LexA repressor cleavage is competitive with binding of a secondary DNA molecule//J. Biol. Chem. 1996. Vol. 271. P. 23865-23873.
  • Roberts J.W., Roberts C.W. Proteolytic cleavage of bacteriophage repressor in induction//Proc. Natl. Acad. Sci. USA. 1975. Vol. 72. P. 147-151.
  • Roca A.I., Cox M.M. RecA protein: structure, function, and role in recombinational repair//Prog. Nucleic. Acid Res. Mol. Biol. 1997. Vol. 56. P. 129-223.
  • Roland K.L. et al. In vitro analysis of mutant LexA proteins with an increased rate of specific cleavage//J. Mol. Biol. 1992. Vol. 228. P. 395-408.
  • Sassanfar M., Roberts J.W. Nature of the SOSinducing signal in Escherichia coli. The involvement of DNA replication//J. Mol. Biol. 1990. Vol. 212. P. 79-96.
  • Schlacher K. et al. DNA polymerase V and RecA protein, a minimal mutasome//Mol. Cell Biol. 2005. Vol. 17. P. 561-572.
  • Schnarr M.P. et al. DNA binding properties of LexA repressor//Biochimie. 1991. Vol. 73. P. 423-431.
  • Sharples G.J. et al. Molecular and functional analysis of the ruv region of Escherichia coli K-12 reveals three genes involved in DNA repair and recombination//Mol. Gen. Genet. 1990. Vol. 221. P. 219-226.
  • Shinagawa H. et al. RecA-protein depended cleavage of UmuD protein and SOS-mutagenesis//Proc. Natl. Acad. Sci. USA. 1988. Vol. 85. P. 1806-1810.
  • Slilaty S.N., Little J.W. Lysine-156 and serine-119 are required for LexA repressor cleavage: a possible mechanism//Proc. Natl. Acad. Sci. USA. 1987. Vol. 84. P. 3987-3991.
  • Smith B.T., Walker G.C. Mutagenesis and more: umuDC and the Escherichia coli SOS response//Genetics. 1998. Vol. 148. P. 1599-1610.
  • Story R.M., Weber I.T.,. Steitz T.A The structure of the E. coli RecA protein monomer and polymer//Nature. 1992. Vol. 355. P. 318-325.
  • Tang M. et al. UmuD'2C is an error-phone DNA polymerase, Escherichia coli pol V//Proc. Natl. Acad. Sci. USA. 1999. Vol. 96. P. 8919-8924.
  • Tippin B., Pham P., Goodman M.F. Error-phone replication for better of or worse//Trends Microbiol. 2004. Vol. 12. P. 288-295.
  • VanBogelen R.A., Kelley P.M., Neidhard F.C. Differential induction of heat shock, SOS and oxidative stress regulons and accumulation of nucleo es in Escherichia coli//J. Bacteriol. 1987. Vol. 169. P. 26-32.
  • Walker G.C., Smith B.T., Sutton M.D. Bacterial Stress Responses//Washington: ASM Press, 2000. P. 131-144.
  • Wang L., Lutkenhaus J. FtsK is an essential cell division protein that localized to the septum and induced that as part of the SOS-response//Mol. Microbiol. 1998. Vol. 29. P. 731-740.
  • Weisemann J.M., Weinstock G.M. Mutations at the cysteine codons of the recA gene of Escherichia coli//DNA. 1988. Vol. 7. P. 389-398.
  • Woodgate R., Ennis D.G. Levels of chromosomally encoded Umu proteins and requirements for in vivo UmuD cleavage//Mol. Gen. Genet. 1991. Vol. 229. P. 10-16.
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